ch1.tex

%chapter 1

\Chapter{NAME IN CAPS}

\section{Mixed Case} 
sections look like this 

\subsection{Mixed Case}
subsections look like this

ch2.tex

\Chapter{ABE LINCOLN'S GETTYSBURG ADDRESS}

\section{The Beginning}
 
Four score and seven years ago our fathers brought forth on this continent, 
a new nation, conceived in Liberty, and dedicated to the proposition that 
all men are created equal \cite{theinternet}.

Now we are engaged in a great civil war, testing whether that nation, or 
any nation so conceived and so dedicated, can long endure. We are met on
a great battle-field of that war. We have come to dedicate a portion of 
that field, as a final resting place for those who here gave their lives 
that that nation might live. It is altogether fitting and proper that we 
should do this. 

app0.tex

% app0.tex (silly little file to separate chapters from appendices)

\appendix

app1.tex

\Appendix{TITLE IN CAPS}

bibliography.tex

%\references{bibliography}
\clearpage
\addcontentsline{toc}{chapter}{BIBLIOGRAPHY} %needed for table of contents entry

\begin{thebibliography}{99}

%example
\bibitem{bugaev}
  See, for example,
  E.~V.~Bugaev, A.~Misaki, V.~A.~Naumov, T.~S.~Sinegovskaya, S.~I.~Sinegovsky and N.~Takahashi,
  %``Atmospheric muon flux at sea level, underground and underwater,''
  Phys.\ Rev.\  D {\bf 58}, 054001 (1998)
  [arXiv:hep-ph/9803488].
  %%CITATION = PHRVA,D58,054001;%%

\bibitem{theinternet}
A. Lincoln, Gettysburg Address, unpublished.

\end{thebibliography}